PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022469P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 219aa    MW: 24998.1 Da    PI: 9.8692
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022469P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.15.1e-20138187151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kp+++Wt  L  rF++av+ + G ++A+Pk+ile+m+v+gLt+e+v+SHLQ
  MELO3C022469P1 138 KPKVVWTDFLQYRFLQAVHYI-GLDRAVPKKILEVMNVPGLTRENVASHLQ 187
                     79*******************.***************************** PP
2Response_reg41.47.5e-1515653109
                     CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     m++mdG+el+k+ + e  klp+i++++++ee+ + +a++ G+  +l+Kpf+p++l +
  MELO3C022469P1   1 MSKMDGFELTKRVNDEF-KLPVIMISTENEESIMYRAIQEGVVLYLVKPFPPNDLKN 56 
                     89***********9999.9***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000723.3E-10156IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.01E-12163IPR011006CheY-like superfamily
PROSITE profilePS5011021.738162IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-12159No hitNo description
Gene3DG3DSA:3.40.50.23002.0E-14169No hitNo description
Gene3DG3DSA:3.40.50.23002.0E-14118123No hitNo description
Gene3DG3DSA:1.10.10.605.0E-21135187IPR009057Homeodomain-like
SuperFamilySSF466891.22E-14136191IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-22138191IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSKMDGFELT KRVNDEFKLP VIMISTENEE SIMYRAIQEG VVLYLVKPFP PNDLKNIWQF  60
SITTESKSKP NPCLSTIEET IISTNGEGEL HAFETHSVSG SNEVILERKK KKKKKSSKEK  120
DREKSNGKKE VKSTKKKKPK VVWTDFLQYR FLQAVHYIGL DRAVPKKILE VMNVPGLTRE  180
NVASHLQVLF SIIILNSYDV LNCQVYSMKS PSLCLFSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15134187154ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112ERKKKKK
2108114KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022964427.12e-68two-component response regulator ORR22-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-27response regulator 2