PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022505P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 229aa    MW: 24793.5 Da    PI: 7.3576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022505P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-39291291100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll+++p+ +r da  +l+yeA ar+rdPvyG+v+ i++lqqq+ +l+ael
  MELO3C022505P1  29 PCGACKFLRRKCVKGCIFAPYFDSDQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAEL 123
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  MELO3C022505P1 124 AYIQAK 129
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32928130IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3729127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTHTQRSTAL HQDSVMSAGE GGVGHGGGPC GACKFLRRKC VKGCIFAPYF DSDQGAAHFA  60
AVHKVFGASN ASKLLHRIPP PKRLDACVTL CYEALARVRD PVYGCVSQIF SLQQQVVNLQ  120
AELAYIQAKL STLQRLFPPA LQTPSPTTCN TPLPEAIPDS DMGLLSNVPM ILDPLQTQLG  180
CNEMTNSFLN PVDYQDQMGE DGDLQSLARE FVSRYLPGVR MRPPCSQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-35261308111LOB family transfactor Ramosa2.1
5ly0_B3e-35261308111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460130.11e-169PREDICTED: LOB domain-containing protein 19
SwissprotO813226e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3CBD61e-168A0A1S3CBD6_CUCME; LOB domain-containing protein 19
STRINGXP_008460130.11e-169(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-65LOB domain-containing protein 31