PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022718P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 224aa    MW: 25599 Da    PI: 9.8025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022718P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2316.2e-10112152451
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     +GV++  k+ +W A I++      +k+++lg+  + eeAa ++++a+ 
  MELO3C022718P1 112 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVASQEEAAHLYDRAAF 152
                     9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-4110169IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-7111155IPR016177DNA-binding domain
PfamPF008472.9E-4112153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-6113161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVSLRRRKLL GLYSGKASFV APVLKFSENL TAEVHVHCTS SVRVYPICSD EVNKIEENPI  60
ANIEPESSGV SVLDTSKEQI DTTNGEPIAD PPVKRRKRHR RKHFPDESFL MRGVYFKNMK  120
WQAAIKVDKK QIHLGTVASQ EEAAHLYDRA AFMCGREPNF ELPEEEKQEL RKFNWDEFLA  180
MTRNTITNRK QKRLNPESKK SELSSPGNDD SNKRRTSSLT SHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818294e-97LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBankLN7132584e-97LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460376.11e-167PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_008460380.11e-167PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X6
RefseqXP_008460381.11e-167PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X6
RefseqXP_016902532.11e-167PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X6
TrEMBLA0A1S3CCT41e-166A0A1S3CCT4_CUCME; ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A1S4E2T21e-166A0A1S4E2T2_CUCME; ethylene-responsive transcription factor-like protein At4g13040 isoform X6
STRINGXP_008460376.11e-166(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-43ERF family protein