PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022962P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 320aa    MW: 36685.4 Da    PI: 8.4483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022962P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-50211572128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv +yL++kve+k++ + e+ik++diyk++PwdLpk  + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s+ 
  MELO3C022962P1  21 LPGFRFHPTDEELVGFYLRRKVEKKPIAI-EIIKQIDIYKYDPWDLPKVSNVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSTl 114
                     69***************************.89***************888889****************************************99 PP

             NAM  96 ..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +++++glkk+Lv+y+g+a kg+ktdW+mhe+rl
  MELO3C022962P1 115 klssndnannNNNVIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 157
                     99988887776777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5519184IPR003441NAC domain
PROSITE profilePS5100553.73320185IPR003441NAC domain
PfamPF023655.5E-2522157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEVTSKLMDI VVDHEDDQII LPGFRFHPTD EELVGFYLRR KVEKKPIAIE IIKQIDIYKY  60
DPWDLPKVSN VGDKEWYFFC IRGRKYRNSI RPNRVTGSGF WKATGIDKPI FSTLKLSSND  120
NANNNNNVIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPFN NNNIIPHDQD HNNAEVWTLC  180
RIFKRIPSFK KYIPTHNNNN NNNQTYPKPQ NPNNSNIIFT SKPKTNFQSQ PYSTDIHHLI  240
HLHETKPKPF EQLTNPNLTL PSCANSSFES SPICLSSLWN GVEGGGGGDD NFTTSGGWDE  300
LRPIVQFAVD PSFQLYECI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47131918174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818650.0LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466794.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK553e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3CTC40.0A0A1S3CTC4_CUCME; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_008466794.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]