PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023051P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 260aa    MW: 30565.5 Da    PI: 10.1492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023051P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+ +G g+W+++a+  g++R +k+c++rw +yl
   MELO3C023051P1 17 KGPWTAEEDRLLMEYVRVHGEGRWNSVAHLAGLRRNGKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   MELO3C023051P1  70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5571268IPR017930Myb domain
SuperFamilySSF466893.29E-3014111IPR009057Homeodomain-like
SMARTSM007173.3E-151666IPR001005SANT/Myb domain
PfamPF002497.7E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-241871IPR009057Homeodomain-like
CDDcd001679.56E-111964No hitNo description
PROSITE profilePS5129419.3569119IPR017930Myb domain
SMARTSM007171.4E-1469117IPR001005SANT/Myb domain
PfamPF002491.1E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2472118IPR009057Homeodomain-like
CDDcd001677.91E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGEHFGWGKV AAEGWRKGPW TAEEDRLLME YVRVHGEGRW NSVAHLAGLR RNGKSCRLRW  60
VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK  120
VTSSRNEKPN ARFLRKHQYH QQQQQQQQYW ELLRQQQHRE LLRQQQQLNR QPAMKAEPIN  180
NSQPQIRQES CTCIISSFNP QIDHDQPGSL LLSLPEAISM EDHQLWDGLL WNFEDFHTNL  240
TPNSAFGKAN VHNLVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-28711917128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460699.10.0PREDICTED: myb-related protein 305-like
TrEMBLA0A1S3CE840.0A0A1S3CE84_CUCME; myb-related protein 305-like
STRINGXP_008460699.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.15e-75myb domain protein 79