PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023161P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 121aa MW: 13524.2 Da PI: 9.7709

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023161P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	7.2e-33	14	71	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e e++++ +rkpylheSRh hA+rR+Rg+gGrF MELO3C023161P1 14 EEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRRERGCGGRF 71 69*******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-34	12	74	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.108	13	74	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.8E-28	15	71	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-24	16	38	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	18	38	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-24	48	71	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MAQARMALPL AMAEEPVYVN AKQYHGILRR RQSRAKAEVE NRISRSQRKP YLHESRHLHA 60 MRRERGCGGR FLSKKKKVEA STSLDDDDDG EGSNISLGSE SMCNGSNCYQ GSQLHLSAYI 120 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-23	14	77	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681880	1e-118	LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBank	LN713262	1e-118	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460780.1	1e-83	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-33	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S3CEE5	3e-82	A0A1S3CEE5_CUCME; nuclear transcription factor Y subunit A-7-like
STRING	XP_008460780.1	5e-83	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	1e-35	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]