PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023230P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 222aa MW: 25611.1 Da PI: 4.421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023230P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	83.8	3.4e-26	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rF Ptde+lv ++L +k+++++ ++ + +i++++++ ++Pw+++ k+++++++ yfFs+ + +rat+sgyWk d++++ MELO3C023230P1 15 LPPGLRFCPTDEDLVLHFLYHKANSHHhFSNSIIIPHLQLHLYNPWQFHgKTLSNGDNIHYFFSRVGE--------SRATESGYWKDVLMDEPIF 101 79******************999984555556**********95566666666688877644........699************ PP NAM 94 sk.kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++ +g +vg+kk +f+ + ++p++ +t+W+m+ey++ MELO3C023230P1 102 CSaNGDEVGIKKYHIFFagdqeeDDESPSPIQTSWIMQEYHI 143 9878999******66665445677788*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-31	13	180	IPR003441	NAC domain
PROSITE profile	PS51005	33.478	15	182	IPR003441	NAC domain
Pfam	PF02365	4.8E-17	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDEGGISGNN SLNLLPPGLR FCPTDEDLVL HFLYHKANSH HHFSNSIIIP HLQLHLYNPW 60 QFHGKTLSNG DNIHYFFSRV GESRATESGY WKDVLMDEPI FCSANGDEVG IKKYHIFFAG 120 DQEEDDESPS PIQTSWIMQE YHIYNYLLNN THHAHPSQNN NNNLSQTKSE FGLWVVCRVF 180 EAKENNNIIG RSMFCYEEDD DDDNESELSY LDEMYLSLDD I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-20	15	185	20	171	NAC domain-containing protein 19
3swm_B	4e-20	15	185	20	171	NAC domain-containing protein 19
3swm_C	4e-20	15	185	20	171	NAC domain-containing protein 19
3swm_D	4e-20	15	185	20	171	NAC domain-containing protein 19
3swp_A	4e-20	15	185	20	171	NAC domain-containing protein 19
3swp_B	4e-20	15	185	20	171	NAC domain-containing protein 19
3swp_C	4e-20	15	185	20	171	NAC domain-containing protein 19
3swp_D	4e-20	15	185	20	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681912	1e-178	LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBank	LN713265	1e-178	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008460884.1	1e-165	PREDICTED: NAC domain-containing protein 104-like isoform X1
TrEMBL	A0A1S3CDX4	1e-164	A0A1S3CDX4_CUCME; NAC domain-containing protein 104-like isoform X1
STRING	XP_008460884.1	1e-164	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31510	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-32	xylem NAC domain 1