PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023409P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 536aa    MW: 59802.3 Da    PI: 6.2407
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023409P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.4e-103553921954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+ +LA+++gLt +qV +WF N R +
  MELO3C023409P1 355 FEHflHPYPKDSEKLKLARQTGLTRNQVANWFINARVR 392
                     664459******************************88 PP
2BELL98.36.1e-32219290172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erq+l++k +kLlsll eVd+rYkqy++qlq+++ssF++vag g+a+ Yt+l  ++iS hFr L+dai  qi
  MELO3C023409P1 219 ERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQMLASSFDMVAGRGAAEFYTALPHQTISCHFRRLRDAINAQI 290
                     799******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-33137288IPR006563POX domain
PfamPF075261.2E-38144286IPR006563POX domain
PROSITE profilePS5007112.438333396IPR001356Homeobox domain
CDDcd000868.31E-13336397No hitNo description
SMARTSM003891.5E-9336400IPR001356Homeobox domain
SuperFamilySSF466893.38E-17337403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27339402IPR009057Homeodomain-like
PfamPF059208.7E-17353392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLGDPKLGPS CQEQQPLCSG NLMMFMNQDP SCRDYSEILS GVSSNYVETV GDRSNVEMAF  60
IPPVVGILDE SNFQCQGVSL SLSTHSPSVV SMSSFPHQYQ TPAMVSSFIN APPSILEKRP  120
NPKSCISDVK NGMYVALGSG YSMLNSVYIE AAQQLLDEMV SIREALKELK SKKLKASNGL  180
GVDSCRENEG GSNDLTGEMC GNAREVSIAN PSSDLSPSER QDLKNKNSKL LSLLGEVDRR  240
YKQYYQQLQM LASSFDMVAG RGAAEFYTAL PHQTISCHFR RLRDAINAQI EVTRRTLGEQ  300
DALHSGQEGI PRLRFVDQHL RQQRALQHLG VTPHSWRPQR GLPESSVSIL RAWLFEHFLH  360
PYPKDSEKLK LARQTGLTRN QVANWFINAR VRLWKPMVEE MYKEEFGDSN IDIKSSPENA  420
SKASWNNSLF SEDRGGDKLH DSTKSVANNG ERILYRQCAT DEMINSSNFT MGGGDVSLAL  480
ELKHCEGDEF GMFGNNNNRM VGSVELEAQD FPCLEPERHH QCRLTSSNML HDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-17342400563Homeobox protein Meis2
4xrm_B9e-17342400563Homeobox protein Meis2
4xrs_A7e-17342399158Homeobox protein Meis1
4xrs_B7e-17342399158Homeobox protein Meis1
5bng_A8e-17342400159Homeobox protein Meis2
5bng_B8e-17342400159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461100.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A1S3CDG80.0A0A1S3CDG8_CUCME; BEL1-like homeodomain protein 7
STRINGXP_008461100.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-90BEL1-like homeodomain 6