PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023454P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 189aa    MW: 20961.8 Da    PI: 10.7147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023454P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2069117355
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  MELO3C023454P1  69 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 117
                     9*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-3368131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-3068125IPR001471AP2/ERF domain
PROSITE profilePS5103222.86668125IPR001471AP2/ERF domain
PfamPF008471.4E-1468117IPR001471AP2/ERF domain
PRINTSPR003676.2E-116980IPR001471AP2/ERF domain
CDDcd000181.51E-1569125No hitNo description
SuperFamilySSF541714.18E-2269126IPR016177DNA-binding domain
PRINTSPR003676.2E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MINTHPIPPL YNTFFETQFP HSPPPESQLD GIAAVVGREV LFGEYNRPTP TKSSSSTSAM  60
APTTGQRSYR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT AEEAARAYDA AARRLRGSKA  120
RTNFEMPLVV PVESTSAWST SSVEVKRNGN KLKKNERKCS VVTSAAHLFS PGVELDLKLG  180
VKNLITFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17691241571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022960429.12e-73ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M53e-27ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0A0KA161e-97A0A0A0KA16_CUCSA; Uncharacterized protein
STRINGXP_008461426.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-28ERF family protein