PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023462P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 234aa    MW: 25793.8 Da    PI: 7.4224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023462P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0588110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F ++ +L  H++ H
  MELO3C023462P1  88 FSCNYCPRKFVSSQSLGGHQNAH 110
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-486114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.43E-686115No hitNo description
PROSITE profilePS5015712.00988115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPQTSMSPET TRINSLAEEL TWLQDPNDSK DTSPELVSLD FRLSNTNLGG GLTQEEEEPN  60
LIDFFDADNL PNGSSYEGVE AAARPRVFSC NYCPRKFVSS QSLGGHQNAH SRERKMAKTS  120
SKMVTNSTGC KYSKSLGIQA RSMIHKPFSY SPVFGSFHPF QLEAKNRQSL YEQLAAGQWP  180
SKKNYLSRTS PVPPSTSGAT SCAGWTLNDS LLDSKRTCNE LHKLDCLDLS LKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461428.11e-170PREDICTED: zinc finger protein 1
TrEMBLA0A1S3CEM51e-169A0A1S3CEM5_CUCME; zinc finger protein 1
STRINGXP_008461428.11e-170(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2472133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-20C2H2 family protein