PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023484P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 364aa    MW: 40642.4 Da    PI: 6.6472
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023484P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.2e-1257113155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ ++ Aa a++ a++k++g
  MELO3C023484P1  57 SVYRGVTRHRWTGRFEAHLWDkNCWNEgQNKKGRQGAYDDEDAAAHAYDLAALKYWG 113
                     78*******************99997778888888*****99*************98 PP
2AP252.89.8e-17156207155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a+++a+ +++g
  MELO3C023484P1 156 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDKAAIEYRG 207
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-857113IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1457122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1158121IPR001471AP2/ERF domain
SMARTSM003802.6E-1758127IPR001471AP2/ERF domain
PROSITE profilePS5103217.88658121IPR001471AP2/ERF domain
PRINTSPR003673.4E-65970IPR001471AP2/ERF domain
CDDcd000185.08E-15156217No hitNo description
PfamPF008474.9E-12156207IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17156217IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-18157216IPR001471AP2/ERF domain
SMARTSM003801.1E-24157221IPR001471AP2/ERF domain
PROSITE profilePS5103218.083157215IPR001471AP2/ERF domain
PRINTSPR003673.4E-6197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAKISNPSHN NSISTTHNDL HSSSSSSSSS ILHSQRKVLT KRTRKSTPRD SPAQRSSVYR  60
GVTRHRWTGR FEAHLWDKNC WNEGQNKKGR QGAYDDEDAA AHAYDLAALK YWGTETVLNF  120
SLLTYQDELK EMEGQSREEY IGYLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN  180
KYLYLGTYAT QEEAAAAYDK AAIEYRGLNA VTNFDLSRYI KCLRPGEQDI PNNNRPPNPN  240
AGETPSQFDP NSLLGFTFPS QCSSSGQTST EPLPEPGDGD SSSSSTAIEL LLHSSNFKDI  300
IERTSTAETP PETDRPRRCF PDDIQTYFDC TQDSGDFAEG DDGIFGYLSS FLPSSVFHCE  360
LDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461207.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3CFD70.0A0A1S3CFD7_CUCME; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_004163518.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-94ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]