PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023541P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 358aa    MW: 40020.1 Da    PI: 7.5435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023541P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC++fa  G C  G+ C F+H+
  MELO3C023541P2  3 KRVLCKYFAH-GACLKGEYCEFSHD 26
                    99****6666.*************5 PP
2zf-CCCH25.32.6e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G C +G+rC++ H+
  MELO3C023541P2 34 VCTYYQK-GRCAFGSRCRYDHV 54
                    6******.*************7 PP
3zf-CCCH21.44.4e-07138160426
                     ---SGGGGTS.--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartG.tCkyGdrCkFaHg 26 
                     ++C+ fa+ G  C++G++C+++Hg
  MELO3C023541P2 138 PICS-FAAAGgDCPRGENCPRIHG 160
                     5788.555555************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1122956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00132955IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-53253IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.031135161IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4138160IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.41E-14192268No hitNo description
Gene3DG3DSA:3.30.40.102.7E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.51E-4203263No hitNo description
PROSITE profilePS5008912.43204262IPR001841Zinc finger, RING-type
SMARTSM001845.2E-8204261IPR001841Zinc finger, RING-type
PfamPF000971.2E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.126291320IPR000571Zinc finger, CCCH-type
SMARTSM003560.22291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHTE  60
SCSNVQQSHG SESLSVAHSQ LSRPLSPFSG STSELASSEM PSLPLRHETA WSGEFVRPDG  120
LDDWGNGEAR VVGPADIPIC SFAAAGGDCP RGENCPRIHG DLCPTCGKQC LHPFRTDERE  180
EHLKACEKKQ KHLESLKHSQ DIECSVCLER VLSKTETAER KFGILSECDH PFCISCIRNW  240
RNSSSTSGMD VNSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKS RLRSIDCKHF  300
NFGNGNCPFG SSCFYKHAHR DGRLEEIALR HIGNEDGLTV IAKNLRLSDF LSDLHIR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461277.20.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-163C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A1S3CEC10.0A0A1S3CEC1_CUCME; E3 ubiquitin-protein ligase makorin
STRINGXP_008461277.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-157C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]