PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023544P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 294aa    MW: 32877.3 Da    PI: 8.3277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023544P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06130149120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C+k F+r  nL+ H+
  MELO3C023544P1 130 FSCPLCSKAFNRYNNLQMHM 149
                     89*****************9 PP
2zf-C2H214.50.0001214236123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k F  k + ++H +++
  MELO3C023544P1 214 FTCRKCTKAFAVKGDWRTHEKNC 236
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.72E-6123152No hitNo description
PROSITE profilePS5015710.866130157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5130149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.11130152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576676.06E-6197234No hitNo description
Gene3DG3DSA:3.30.160.605.1E-5201234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565214234IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTDPNYSNSF NFIHLPPSNF LLSQCRRPLP PPSPPSSPPQ ALPLLNTLSP ETADHPSSST  60
TTCSYDDESA VLALDIGLSC PSSDLDSFSP DPGNRKIIDG EISDHPLPIS GKGQYWIPTP  120
SQILIGPTQF SCPLCSKAFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPTA MLRLPCYCCA  180
AGCKHNIDNP RSRPLKDFRT LQTHYKRKHG IKPFTCRKCT KAFAVKGDWR THEKNCGKIW  240
YCFCGSDFKH KRSLKDHIKA FGRGHGALGL DYFDDDNEPS PELDEDHLFV RLR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461280.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-111ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3CFK30.0A0A1S3CFK3_CUCME; zinc finger protein WIP2-like
STRINGXP_008461280.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]