PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023633P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 188aa    MW: 21647.5 Da    PI: 10.1381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023633P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l ++v+ +G g+W+++ar+ g++Rt+k+c++rw++yl
   MELO3C023633P1  5 KGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 52
                     79********************************************97 PP
2Myb_DNA-binding47.83.3e-1558101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   MELO3C023633P1  58 RGNITLQEQLLILELHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 101
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.637156IPR017930Myb domain
SuperFamilySSF466891.83E-31299IPR009057Homeodomain-like
SMARTSM007172.2E-14454IPR001005SANT/Myb domain
PfamPF002495.4E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-22659IPR009057Homeodomain-like
CDDcd001671.34E-11752No hitNo description
PROSITE profilePS5129417.20957107IPR017930Myb domain
SMARTSM007173.4E-1357105IPR001005SANT/Myb domain
PfamPF002493.8E-1458101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2160106IPR009057Homeodomain-like
CDDcd001672.65E-778101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDVRKGPWTA EEDSVLFNYV NCHGEGRWNA VARCTGLKRT GKSCRLRWLN YLRPSVRRGN  60
ITLQEQLLIL ELHFRWGNRW SKIAQYLPGR TDNEIKNYWR TRVQKQAKQL NCDVNSKQFR  120
DAMRYVWMPR LLERIQASTD STATTVDVIQ PSHPPLELTQ SSPSGSSWVN PHVAPTTSSS  180
DSIFDQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25210724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0369010.0FJ036901.1 Cucumis sativus clone CU20C06 myb-like transcription factor Myb5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461407.11e-138PREDICTED: transcription factor MYB108-like
SwissprotQ10MB41e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S3CEB91e-137A0A1S3CEB9_CUCME; transcription factor MYB108-like
STRINGXP_008461407.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-76myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]