PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023840P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 185aa    MW: 19995.7 Da    PI: 10.2188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023840P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00114365123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  MELO3C023840P1 43 FECKTCNRQFSSFQALGGHRASH 65
                    89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-941115No hitNo description
PfamPF139121.3E-124267IPR007087Zinc finger, C2H2
SMARTSM003550.24365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3464370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139127.9E-1092117IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91293115IPR007087Zinc finger, C2H2
SMARTSM003550.593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MKRERDLESI TTMANCLMLL SRNTAADHFE SSSTNSSSPN RVFECKTCNR QFSSFQALGG  60
HRASHKKPRI VGGDGGNSDG SSSQGSPTKP KTHECSICGL EFAIGQALGG HMRRHRATTL  120
LNDARLLTNH PRRSLSPPPP KPPVVKKSNG GGRILCLDLN LTPSENDSRF LQLGKSVSMV  180
DCFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818970.0LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461644.11e-133PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A1S3CF731e-132A0A1S3CF73_CUCME; zinc finger protein ZAT12-like
STRINGXP_008461644.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-37C2H2 family protein