PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023977P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 726aa MW: 79423.1 Da PI: 6.6481

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023977P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	303	323	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg MELO3C023977P1 303 PCPDFRK-GACRRGDMCEYAHG 323 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12796	1.8E-10	77	150	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.06E-16	80	160	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.96E-14	80	159	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.5E-17	80	160	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.228	81	157	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.024	81	111	IPR002110	Ankyrin repeat
PRINTS	PR01415	5.4E-5	82	97	IPR002110	Ankyrin repeat
SMART	SM00248	7.6E-4	116	148	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.155	116	151	IPR002110	Ankyrin repeat
PRINTS	PR01415	5.4E-5	135	149	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	298	324	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	303	325	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	303	325	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-5	303	323	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	331	361	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	52	333	356	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MCGGPEKSNS SSTTTASSSP NPKDMNLLTV DCEDSFYSLL ELVSDNDAEG FKSLMESDLF 60 SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSYPEVDVN LSAGTDKSTA 120 LHCATSSGSV NAVDIVDLLL SAGADPNSKD VNGDRPVDVI FIHPKLQKQN TRFKLEELLN 180 NSSNGSMDVS CLHLSIKTPS SESPPLSSSL EDEFPSPPKS ISSPKFTDGF GNSTKEKKEY 240 PIDPSLPDIK NSIYATDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHTNEELR 360 PLYVSTGSAV PSPRSIGSAP TVMDMATALG LLPGSPSSMS ALSPSPFTQS MSPSSNGVSH 420 SSVNWQQPNV PTLHLPGSNL QSSRLRSSLN ARDMPLEDLN ALPDFENQPR ILNDMNCFSQ 480 PRPSAVSVSR SGWTQTLTPN NLEELFSSEI SSSPRFSDPA ANVFSPTRKS TMLNQFQQQQ 540 QNMLSPINTS IMSPKNVDHH LLQASFGVSS PGRMSPRSTE PLSPMGSRFS AFVQREKQHL 600 RTLSSRELGS NIPSSLIGSP VNSMPKWGSP NGKVDWSVGK NELGQLRRSS SFEMGNNGEE 660 PDLSWVQSLV KESPPEMLKD KLAVPGMGTA ASGEGLTTSK SQLESTDHSV IGAWLEQMQL 720 DQLVV*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MCGGPEKSNS SSTTTASSSP NPKDMNLLTV DCEDSFYSLL ELVSDNDAEG FKSLMESDLF  60
SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSYPEVDVN LSAGTDKSTA  120
LHCATSSGSV NAVDIVDLLL SAGADPNSKD VNGDRPVDVI FIHPKLQKQN TRFKLEELLN  180
NSSNGSMDVS CLHLSIKTPS SESPPLSSSL EDEFPSPPKS ISSPKFTDGF GNSTKEKKEY  240
PIDPSLPDIK NSIYATDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCNRRVC FFAHTNEELR  360
PLYVSTGSAV PSPRSIGSAP TVMDMATALG LLPGSPSSMS ALSPSPFTQS MSPSSNGVSH  420
SSVNWQQPNV PTLHLPGSNL QSSRLRSSLN ARDMPLEDLN ALPDFENQPR ILNDMNCFSQ  480
PRPSAVSVSR SGWTQTLTPN NLEELFSSEI SSSPRFSDPA ANVFSPTRKS TMLNQFQQQQ  540
QNMLSPINTS IMSPKNVDHH LLQASFGVSS PGRMSPRSTE PLSPMGSRFS AFVQREKQHL  600
RTLSSRELGS NIPSSLIGSP VNSMPKWGSP NGKVDWSVGK NELGQLRRSS SFEMGNNGEE  660
PDLSWVQSLV KESPPEMLKD KLAVPGMGTA ASGEGLTTSK SQLESTDHSV IGAWLEQMQL  720
DQLVV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681835	0.0	LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461797.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_008461798.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_008461799.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3CFE0	0.0	A0A1S3CFE0_CUCME; zinc finger CCCH domain-containing protein 30-like
STRING	XP_008461797.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]