PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024520P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 191aa    MW: 20635.1 Da    PI: 4.3257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024520P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-181666155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  MELO3C024520P1 16 PRYRGVRRRS-SGKWVSEIRVPR----KpNRIWLGTFPTPEMAAVAYDVAALALKG 66
                    68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.98E-331676No hitNo description
PfamPF008474.3E-111666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-301776IPR001471AP2/ERF domain
SMARTSM003802.5E-351780IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-211776IPR016177DNA-binding domain
PROSITE profilePS5103222.6421774IPR001471AP2/ERF domain
PRINTSPR003674.9E-111829IPR001471AP2/ERF domain
PRINTSPR003674.9E-115676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFFSKSKTFN STSNPPRYRG VRRRSSGKWV SEIRVPRKPN RIWLGTFPTP EMAAVAYDVA  60
ALALKGPNAD LNFPNSASSL PVPASTAACD IQAAATSAAA AIGAAADAMG LDGNHVSWSR  120
EKEEDGGGCE EELVEGGFVD EDMIFDMPNI LMNMAEGMLL TPPPFNFNMN ASNDFEYPPT  180
YSQDTLWEFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1417751473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818760.0LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462542.11e-139PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-47ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3CH571e-137A0A1S3CH57_CUCME; ethylene-responsive transcription factor ERF024
STRINGXP_008462542.11e-138(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-35ERF family protein