PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C024560P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 269aa MW: 30871.5 Da PI: 6.3705

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C024560P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.8	1.9e-44	6	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL +k+eg + ++++i+ +diy+++PwdLp+ +k +e++w+fF++r++++a+g r++r+t+sgyWkatg MELO3C024560P1 6 LPPGFRFYPTEEELVSFYLYHKLEGGRqyfnGVVDQIIPILDIYHFNPWDLPQfageVCKRDEEQWFFFIPRQESEARGGRPKRVTSSGYWKATG 100 79*********************9977643334579999*******657765566888*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + v+s+ +++ +g+k+++vfy+grapkg+kt+W m+ey+l MELO3C024560P1 101 SPTYVYSSnNHRSIGIKRSMVFYNGRAPKGTKTQWKMNEYKL 142 **9867778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-49	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	50.798	6	165	IPR003441	NAC domain
Pfam	PF02365	5.9E-23	7	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEGYTLPPGF RFYPTEEELV SFYLYHKLEG GRQYFNGVVD QIIPILDIYH FNPWDLPQFA 60 GEVCKRDEEQ WFFFIPRQES EARGGRPKRV TSSGYWKATG SPTYVYSSNN HRSIGIKRSM 120 VFYNGRAPKG TKTQWKMNEY KLVAAEQPFP STTIPKLSLC RIYKKSKTVR AFDRRPPLPQ 180 VEAPIPTELR ATTTSQQNDI AGDQFVDDDQ KLLSNPPLMA TERPSSPESF SSGDDHGESS 240 TNNNDNGQVK MEVDNNELVW DWNHLNWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-40	5	170	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-40	5	170	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-40	5	170	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-40	5	170	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-40	5	170	19	173	NAC domain-containing protein 19
3swm_B	2e-40	5	170	19	173	NAC domain-containing protein 19
3swm_C	2e-40	5	170	19	173	NAC domain-containing protein 19
3swm_D	2e-40	5	170	19	173	NAC domain-containing protein 19
3swp_A	2e-40	5	170	19	173	NAC domain-containing protein 19
3swp_B	2e-40	5	170	19	173	NAC domain-containing protein 19
3swp_C	2e-40	5	170	19	173	NAC domain-containing protein 19
3swp_D	2e-40	5	170	19	173	NAC domain-containing protein 19
4dul_A	2e-40	5	170	16	170	NAC domain-containing protein 19
4dul_B	2e-40	5	170	16	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681876	0.0	LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462590.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A1S3CHU2	0.0	A0A1S3CHU2_CUCME; NAC domain-containing protein 90-like
STRING	XP_008462590.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-67	NAC domain containing protein 61