PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024865P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 598aa    MW: 65842.5 Da    PI: 5.0731
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024865P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-5291361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+evd++k+ePwdLp  + +k+++ ew+fF+++d+ky++g+r +rat +gyWkatgkd++++
  MELO3C024865P1   9 LPLGFRFRPTDEELIDYYLRSKINGNHEDV-SVIREVDVCKWEPWDLPdlSIIKTKDPEWFFFCPQDRKYPNGHRLKRATVAGYWKATGKDRKIK 102
                     699************************999.99**************96447788889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s +++l+g+kktLvfykgrapkg++t+Wv+heyr 
  MELO3C024865P1 103 S-GTKLIGMKKTLVFYKGRAPKGKRTNWVVHEYRT 136
                     *.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-594159IPR003441NAC domain
PROSITE profilePS5100556.1289159IPR003441NAC domain
PfamPF023654.6E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAVLTLNSLP LGFRFRPTDE ELIDYYLRSK INGNHEDVSV IREVDVCKWE PWDLPDLSII  60
KTKDPEWFFF CPQDRKYPNG HRLKRATVAG YWKATGKDRK IKSGTKLIGM KKTLVFYKGR  120
APKGKRTNWV VHEYRTTLKE LDGTNPGQSA FVLCRLFKKQ DESIEGSNGD EAEAAISSPT  180
TAESSPGPGD SHSEPILPLV SPSLQRQAES SDGVLSETVE HTDGSADIHG FDSYNAEMDP  240
HPDEERKFCG SENKPLDSKL YSPLHSQLQA ELGSSGIYYS DSNYLNYEAN GNAEQLPSGT  300
EESDFIYQML DSFVYNLDDF PLEDQQELMS LSEFPNNTLD SLDNGFFGKV EADNVKPMVM  360
PDFESSICLE DIDRKTPIVD HVGTAPPEQG QFYNISGSLQ ESYNQSSAVE SMDAGTGIQR  420
ISRRPRSLQQ PNEFSTFQGT APRRLRLQSK LVAPSSCSSN VYSESGGSWD NDQPSISSKV  480
KKAAESKTTG GNCASAGGAV AAATVDVVKQ SQMTPNAESG VSSSKASHEV SAKSVASYSS  540
KIDFLTGKRR LVTALPPSIL SYVSVVRLVV VALSIIFISI WKCCNREQRG YFLSPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44816214171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462914.10.0PREDICTED: NAC domain-containing protein 62
TrEMBLA0A1S3CJK70.0A0A1S3CJK7_CUCME; NAC domain-containing protein 62
STRINGXP_008462914.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-98NAC transcription factor-like 9