PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025049P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 262aa MW: 27495.8 Da PI: 9.5631

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025049P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.8e-36	40	111	2	73
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i++ tgt++++as++ MELO3C025049P1 40 PVKKTPYKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIATTGTGTTPASFS 111 579*************************************************************99999777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-31	46	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.514	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MSASDGVNNN NAAIIDPSHQ QHIHQIQANQ SSNNATTPLP VKKTPYKDRH SKVDGRGRRI 60 RMPIVCAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAT TGTGTTPASF STISASLRTP 120 PAASVFDHKP LLPPAPFILG KRVRTDDDEA NKDDTGGDGP GISVGPSIGS IMGPAVAGGY 180 WAIPARSDFG QLWSFAAAAA APEMVIQPTA VSHQASLFVQ QQSMGEASAA KVGNYLPGHL 240 NLLASLSGGP GSSGRRDNDH R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681894	0.0	LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463113.1	0.0	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	3e-84	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3CIF9	0.0	A0A1S3CIF9_CUCME; transcription factor TCP21-like
STRING	XP_008463113.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-65	TCP family protein