PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025504P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 103aa MW: 11653.8 Da PI: 9.6206

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025504P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.5	2e-23	16	82	1	67
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +CaaCk+lrrkC+++C+lapyfp ++p kfa+vh+++Ga nv+k+ ++lpe e++++++ y ++ MELO3C025504P1 16 PCAACKILRRKCVDNCILAPYFPPTDPLKFAAVHRIYGAGNVIKFFQELPERVGERMLRAVWYTKRM 82 7************************************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.822	15	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-22	16	83	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
NTMQSPPPPC TVVLSPCAAC KILRRKCVDN CILAPYFPPT DPLKFAAVHR IYGAGNVIKF 60 FQELPERVGE RMLRAVWYTK RMQESETQSM GALVQYFNFK IK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-20	15	93	10	90	LOB family transfactor Ramosa2.1
5ly0_B	9e-20	15	93	10	90	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681891	1e-100	LN681891.1 Cucumis melo genomic scaffold, anchoredscaffold00079.
GenBank	LN713263	1e-100	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022939142.1	4e-30	LOB domain-containing protein 1-like
Swissprot	Q9SK08	3e-27	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0A0KU20	1e-34	A0A0A0KU20_CUCSA; Uncharacterized protein
STRING	XP_004173617.1	7e-36	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-29	LOB domain-containing protein 11