PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025584P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 188aa    MW: 21603.6 Da    PI: 9.8094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025584P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51221481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGfrF+Ptdeel+++yLkkk+eg++ ++ evi+ev+iyk+ePwdLp k++ ++++ew+fFs+r kky++g++++rat+ gyWkatgk+++v+s
  MELO3C025584P3  22 MFPGFRFSPTDEELISFYLKKKLEGHEKSV-EVIAEVEIYKYEPWDLPaKSIIQSDNEWFFFSPRGKKYPNGNQTRRATDLGYWKATGKERNVKS 115
                     579************************999.99***************767778899************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++++g+k+tLvf++grapkge+t+W+mhey+ 
  MELO3C025584P3 116 -GSNTIGTKRTLVFHTGRAPKGERTEWIMHEYNT 148
                     .99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5413155IPR003441NAC domain
PROSITE profilePS5100551.28522173IPR003441NAC domain
PfamPF023653.2E-2624147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAAGAENRVS REVQLSMAVS SMFPGFRFSP TDEELISFYL KKKLEGHEKS VEVIAEVEIY  60
KYEPWDLPAK SIIQSDNEWF FFSPRGKKYP NGNQTRRATD LGYWKATGKE RNVKSGSNTI  120
GTKRTLVFHT GRAPKGERTE WIMHEYNTKD KAQVSSSCFK LKFAFVLCYW ISTWKNDDGS  180
WSKIVFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45111464138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819290.0LN681929.1 Cucumis melo genomic scaffold, anchoredscaffold00080.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463642.11e-109PREDICTED: NAC domain-containing protein 89-like isoform X2
SwissprotQ94F582e-73NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A1S3CJQ81e-108A0A1S3CJQ8_CUCME; NAC domain-containing protein 89-like isoform X2
STRINGXP_008463641.11e-107(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.19e-76NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]