PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025714P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 193aa    MW: 22115.6 Da    PI: 6.9176
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025714P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-19968357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++t+eq+ +Lee +++  ++p+a+++++++++l    +++ ++V++WFqN++a++++
  MELO3C025714P1  9 SRWCPTPEQVMILEEIYRNgLKTPNATQIQHITSHLsfygKIEGKNVFYWFQNHKARDRQ 68
                    7*****************99*************************************996 PP
2Wus_type_Homeobox117.27.6e-38969464
  Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +RW+PtpeQ++iLee+y++Gl+tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
     MELO3C025714P1  9 SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSFYGKIEGKNVFYWFQNHKARDRQK 69
                       8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.62469IPR001356Homeobox domain
SMARTSM003894.6E-4673IPR001356Homeobox domain
SuperFamilySSF466894.71E-11969IPR009057Homeodomain-like
PfamPF000462.3E-17968IPR001356Homeobox domain
CDDcd000864.08E-41069No hitNo description
Gene3DG3DSA:1.10.10.601.3E-71068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSPSSITPSR WCPTPEQVMI LEEIYRNGLK TPNATQIQHI TSHLSFYGKI EGKNVFYWFQ  60
NHKARDRQKL RRKLYKQLQQ HHFFMKRQRF DDDHDHHHFF QYFLPHHVPQ LLPQLPSPSS  120
LQRELGEEEA ATEVEGGGGR RWLGGDDGTT VAEEDGETTC GNGSLRTLEL FPVRGSWVKE  180
EEGTSGNGGW GN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463857.11e-143PREDICTED: WUSCHEL-related homeobox 3
TrEMBLA0A1S3CK691e-142A0A1S3CK69_CUCME; WUSCHEL-related homeobox 3
STRINGXP_008463857.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-39WOX family protein