PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C025765P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 223aa    MW: 25030.2 Da    PI: 9.8779
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C025765P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.22.4e-15113204899
           NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     ++ e++++ k  ++P+ rikki++ ++   +i  ea  l+ ka e+f++++   ++  + + ++++l    ++++v++ + +dfl d vp++
  MELO3C025765P1 113 EEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 204
                     566778888999************9999999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.4E-1792197IPR009072Histone-fold
PfamPF008085.9E-16125188IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-23126203IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSKKSSTE AKGKEAGTSK PAPKAKTHNN ARNSDKEISK KKKKKKKISI STNNGSVKDN  60
EVLAVSPPGG SASEDDDAAD EDKAETTSRK HKTSKSKKVK RNHAKEEDNG YAEEEEEEAE  120
EKIYKFPMHR IKKIMRDENS DLRINQEALF LVNKASEMFL VQFCKDAYAC CAQDRKKSLA  180
YKHLSSVVSK RKRYDFLSDF VPEKLKFEDA LKERSMAESG KD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKK
2174192RKKSLAYKHLSSVVSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463933.11e-159PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A1S3CKU71e-158A0A1S3CKU7_CUCME; DNA polymerase epsilon subunit C
STRINGXP_008463933.11e-159(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-33nuclear factor Y, subunit C10