PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026008P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 195aa    MW: 21481.8 Da    PI: 7.0709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026008P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-095696954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++l+P       +K++ +++L +A++Y+k L
  MELO3C026008P1 56 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLDEAIHYVKFL 96
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3584796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1352107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-1353100No hitNo description
SMARTSM003531.6E-1253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-1253100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-75696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDYNFPASNP SSCGSSSGGG GGKEKMKKNN NNNHGGAGKR SKGVVKLSTD PQSVAARERR  60
HRISDRFKIL QSLVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQTMINFV DYDSNSSAAV  120
SAAATANSGF PFEQIASGEY NNMNNLLYPQ NDVVKMEEPN FLPQLDPNNN NNVYFPSDHQ  180
DQFISSSYDP YINF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818840.0LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023518081.12e-90transcription factor bHLH140-like
TrEMBLA0A0A0KXM01e-107A0A0A0KXM0_CUCSA; Uncharacterized protein
STRINGXP_008464215.11e-143(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-33APRATAXIN-like