PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026024P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 374aa    MW: 41996.9 Da    PI: 6.1924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026024P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1873132255
             AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr++  +g+WvAeIr+p   n+     k+ +r +lg+f ta +Aa a+++a+k+++g
  MELO3C026024P1  73 NFRGVRQRT-WGKWVAEIREPIAsNNntrlkKKgTRLWLGTFSTAHQAAHAYDEAAKAMYG 132
                     69****999.**********65565559*96448************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-3072142No hitNo description
PfamPF008472.0E-1372132IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1973142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2973142IPR001471AP2/ERF domain
PROSITE profilePS5103221.93173140IPR001471AP2/ERF domain
SMARTSM003804.7E-3473146IPR001471AP2/ERF domain
PRINTSPR003672.5E-97485IPR001471AP2/ERF domain
PRINTSPR003672.5E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTSENSSGGK TSRKRRNGYV SVVDTLNKWK KLNNQLEDLA KDGGVEETRR VPAKGSKKGC  60
MRGKGGPQNS DCNFRGVRQR TWGKWVAEIR EPIASNNNTR LKKKGTRLWL GTFSTAHQAA  120
HAYDEAAKAM YGPFARLNFP DSSSPPVMKP LTSEHSDTIS PVASSSSSSS FFNGVPAEKM  180
KGCYSMDKQE NCEYESMEEL KVKVEETARS RVHCTDIKPN SFYDSNIGNR SEGNIMEGLA  240
DVLRSHDQNS PSELCFKFEA MDTNGCNDLN ECNQYVLQKL QSDPYGRTYW IPAEWEIGDL  300
GSATVMEGKP MEIESYGDCM AFNRDLGLLL DRQKHMGVGD QRVDDCNNFE FLRPDYDFGL  360
EEERKWLDLC FHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1673140260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818840.0LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464230.10.0PREDICTED: ethylene-responsive transcription factor ERF036
TrEMBLA0A1S3CL170.0A0A1S3CL17_CUCME; ethylene-responsive transcription factor ERF036
STRINGXP_008464230.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.16e-33ERF family protein