PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026180P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 243aa MW: 27513.5 Da PI: 6.5747

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026180P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.8	1.5e-34	4	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkd 89 lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p ++ ++++e y Fsk++ ++ +++++ ksgyWka g++ MELO3C026180P1 4 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEInGVWNLDPWDIP-AAGGGDEEKYLFSKKEAEEYNNNNNGEGgiigwSKSGYWKARGRE 96 79**************************.88999978******.5567899999998776654444425677788****** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke++s+ + +l+g+k tL fy+++ +k +kt Wvmh+yrl MELO3C026180P1 97 KEIVSSenGVALMGMKSTLDFYTNNIRKMKKTGWVMHQYRL 137 *8544556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-37	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	40.302	4	157	IPR003441	NAC domain
Pfam	PF02365	2.8E-21	5	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRRLPPGFRF EPTEEELVFE YLKCKVFSSA LPASIIPEIN GVWNLDPWDI PAAGGGDEEK 60 YLFSKKEAEE YNNNNNGEGG IIGWSKSGYW KARGREKEIV SSENGVALMG MKSTLDFYTN 120 NIRKMKKTGW VMHQYRLIIP HSHSSTNKWV LCHILSPTNK LFDHIIHPHR HRRRLRYSIS 180 STKDENGDDQ DEHDEHVNHI TTSTAFSDDE HDSVSSTASS SSTSATFTDF TSTTTATTTF 240 HL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-25	4	154	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-25	4	154	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-25	4	154	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-25	4	154	17	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-25	4	154	20	165	NAC domain-containing protein 19
3swm_B	1e-25	4	154	20	165	NAC domain-containing protein 19
3swm_C	1e-25	4	154	20	165	NAC domain-containing protein 19
3swm_D	1e-25	4	154	20	165	NAC domain-containing protein 19
3swp_A	1e-25	4	154	20	165	NAC domain-containing protein 19
3swp_B	1e-25	4	154	20	165	NAC domain-containing protein 19
3swp_C	1e-25	4	154	20	165	NAC domain-containing protein 19
3swp_D	1e-25	4	154	20	165	NAC domain-containing protein 19
4dul_A	1e-25	4	154	17	162	NAC domain-containing protein 19
4dul_B	1e-25	4	154	17	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681814	0.0	LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008464389.1	0.0	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A1S3CLH3	0.0	A0A1S3CLH3_CUCME; NAC domain-containing protein 83-like
STRING	XP_008464389.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24798	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-35	NAC domain containing protein 83