PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026622P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 433aa    MW: 46745 Da    PI: 7.619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026622P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09106128326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+ + G C yGd+C+F H+
  MELO3C026622P1 106 EKLCNFWVQ-GSCTYGDKCRFLHS 128
                     579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0542146IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7372147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6105129IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-8107127IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.1E-46127182IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.1E-16128242IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6134173IPR001680WD40 repeat
PfamPF004001.2E-6136173IPR001680WD40 repeat
PROSITE profilePS5008214.853141182IPR001680WD40 repeat
PROSITE profilePS5029421.516141343IPR017986WD40-repeat-containing domain
PRINTSPR003201.1E-6160174IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM0032014213250IPR001680WD40 repeat
SuperFamilySSF509781.1E-46220425IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.9E-31243422IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.2E-4257294IPR001680WD40 repeat
PfamPF004000.0078261294IPR001680WD40 repeat
PROSITE profilePS5008211.979264303IPR001680WD40 repeat
PRINTSPR003201.1E-6281295IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7E-4297334IPR001680WD40 repeat
PfamPF004000.003299333IPR001680WD40 repeat
PRINTSPR003201.1E-6321335IPR020472G-protein beta WD-40 repeat
SMARTSM0032020340381IPR001680WD40 repeat
SMARTSM003205.2384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDVDGGGKRV FQRLGAPSGD SRNQKVCFHW RAGKCSRYPC PYLHRELNGP PHAASNGAAN  60
AAPKRGHGFA SDDSSVSVPR RSPNFSGGST WGRVHGGGNR IIRKTEKLCN FWVQGSCTYG  120
DKCRFLHSWS LGESFSHLTH LDGHQKVITG IAFPSGSDKL YTGSKDETVR VWDCQSGQCM  180
AIINLGGQVG SMIAEGPWVF VGIPNCVKAW NIQTSADLSL SGPVGLVYSL VVGNDLLFAG  240
TQDGSILAWK FNVATNCFEP AASLSGHTLP VVSLVVGANR LYSGSMDHTI KVWSLESLQC  300
LQTLTDHTSV VMSVLCWEQF LLSCSLDKTI KVWAATESGN LEVTYTQKED HGLLTLCGMH  360
DLDGKPILLC SCNDNSVRLY DLPSFSERGK IYSKEEIRSI QAGPGGIFFT GDGTGQVKVW  420
TWLAEQAVAA SM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-221314204323Tako8
6g6n_A1e-221314204323Tako8
6g6n_B1e-221314204323Tako8
6g6n_C1e-221314204323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818400.0LN681840.1 Cucumis melo genomic scaffold, anchoredscaffold00098.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464976.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A1S3CMV30.0A0A1S3CMV3_CUCME; zinc finger CCCH domain-containing protein 48-like
STRINGXP_008464976.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1