PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026785P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 182aa    MW: 20571.2 Da    PI: 9.9084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026785P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000357092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F +   L  H+++H
  MELO3C026785P1 70 YTCGFCKRQFQSAQALGGHMNVH 92
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-66796No hitNo description
PfamPF139128.4E-67093IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8457097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MESRNCFGIT TSSSSHGGQE LRIITKPKMK PQLKAKASSK HSNKREGKQE EEEKEKEIIV  60
EFPWASSRAY TCGFCKRQFQ SAQALGGHMN VHRRDRAKLR RSLPLDSATN DDHHHDFLGS  120
SSQPIKFLKL YDFSSFHGEQ ADDQSDGGCK IWKKVNKFVK KKETALLATS NDIDLELRLG  180
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818430.0LN681843.1 Cucumis melo genomic scaffold, anchoredscaffold00105.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465205.11e-133PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A1S3CPU81e-132A0A1S3CPU8_CUCME; transcriptional regulator SUPERMAN
STRINGXP_008465205.11e-133(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2456722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-16zinc finger protein 11