PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C026798P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 125aa    MW: 13746.5 Da    PI: 10.4077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C026798P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-061739123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++sF++   L  H+  H
  MELO3C026798P1 17 YECTICKRSFKSAKALGGHMHIH 39
                    99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.7E-71643No hitNo description
Gene3DG3DSA:3.30.160.604.0E-51742IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00281739IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-81736IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.9461744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNCGKQSGGS QSASWSYECT ICKRSFKSAK ALGGHMHIHS NEEIDTKLKL QSTSESIPTD  60
LRWVVLSATA EGRGRDRNRG KGSKEQVRMG KVKELSLFGK KPSNLKKLFG EKTGQSSQQD  120
NVVSE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819020.0LN681902.1 Cucumis melo genomic scaffold, anchoredscaffold00106.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465230.11e-87PREDICTED: uncharacterized protein LOC103502886
TrEMBLA0A1S3CNE23e-86A0A1S3CNE2_CUCME; uncharacterized protein LOC103502886
STRINGXP_008465230.15e-87(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3153922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-09C2H2 family protein