PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C026920P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 187aa MW: 20529 Da PI: 5.6972

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C026920P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.6	1.3e-31	38	107	8	73
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec 73 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg + sa c MELO3C026920P1 38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASAtldlPGC 107 59********************************************************555553333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-27	38	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.43	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGSKNMRVKK PTSNSPRNAP KLNSPIASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA 60 RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKNIASA TLDLPGCSKP FDPSSSNINS 120 TTTSYFEEET LGGNNYAFPT VNECIPLPNY EFDLVSDFDM ELFAHHIATL QEVAENSEQE 180 TEDGDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681935	0.0	LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465370.1	1e-137	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	2e-26	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3CNQ2	1e-136	A0A1S3CNQ2_CUCME; transcription factor TCP7
STRING	XP_008465370.1	1e-137	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-28	TCP family protein