PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C027103P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 201aa MW: 21750 Da PI: 11.8715

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C027103P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.1	3.9e-08	179	196	2	19
G2-like 2 prlrWtpeLHerFveave 19 pr+rWt++LH+rFv+ave MELO3C027103P1 179 PRMRWTTTLHARFVHAVE 196 9****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-5	177	196	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSS TNSKPSSNSN WRTQPISSIS PQHPLDLMFW NHNNNNNINK 60 SFPSNNSSSN SSNFDPSLSN SSNFLSHHFP PTVNGGGAGL FHRHLHDLHP QGLGFLRPIR 120 GIPVYQNPPS SSTSSSSSSY PIFGGSGGGG GGGGSQFSYN GLRSRFLARF PAKRSIRAPR 180 MRWTTTLHAR FVHAVELGWP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682076	0.0	LN682076.1 Cucumis melo genomic scaffold, unanchored_scaffold00308.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465527.1	5e-92	PREDICTED: probable transcription factor KAN2
TrEMBL	A0A1S3CP02	1e-90	A0A1S3CP02_CUCME; probable transcription factor KAN2
STRING	XP_008465527.1	2e-91	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-15	G2-like family protein