PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027196P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 213aa    MW: 24068.9 Da    PI: 4.6314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027196P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-201464155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr++k +g+WvAeIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  MELO3C027196P1 14 TKYRGVRRRK-WGKWVAEIRLPNS---RDRIWLGSYDSPEKAARAFDAALFCLRG 64
                    69*****998.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-301474No hitNo description
PfamPF008472.9E-131464IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-211573IPR016177DNA-binding domain
SMARTSM003804.5E-351578IPR001471AP2/ERF domain
PROSITE profilePS5103222.6291572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-291573IPR001471AP2/ERF domain
PRINTSPR003672.1E-91627IPR001471AP2/ERF domain
PRINTSPR003672.1E-93854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNNNLSQTSA AGDTKYRGVR RRKWGKWVAE IRLPNSRDRI WLGSYDSPEK AARAFDAALF  60
CLRGPHAKFN FPEQPLPDIL NAHSLTAHQI QEFAAKFANE YDCHQNDVVD DVAPPPTTTT  120
TTTTAEDNCG NSPSSSNYNN VDWSFLDEIH DHHNPNPHSS SNFFPLYNDH FDNILTNDFY  180
QSSTTNNTND LYDAVSGDDD DTFSNQPFLW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1515741474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6824780.0LN682478.1 Cucumis melo genomic scaffold, unanchored_scaffold00619.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466852.11e-157PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1S3CSD21e-156A0A1S3CSD2_CUCME; ethylene-responsive transcription factor ERF017-like
STRINGXP_008466852.11e-157(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-42ERF family protein