PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C027244P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 500aa    MW: 55747.8 Da    PI: 8.9549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C027244P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  MELO3C027244P1  84 FVCEICSKGFQRDQNLQLHRRGH 106
                     89*******************88 PP
2zf-C2H212.80.00037161183123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  MELO3C027244P1 161 WKCDKCSKRYAVQSDWKAHSKTC 183
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-783106No hitNo description
SMARTSM003550.03684106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88784106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355250126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-7156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MIKSLLFQHQ SQAMEENLSN LTSASGEASA CSGNHSDQIP TNYSGQFFST PPPPKKKRNL  60
PGNPDPDAEV IALSPKTLMA TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKEV  120
IRKKVYVCPE TSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TSNPPILITN NNNNYNQNHL  240
LPPLSSMATP NIHSQLNFQI TQQTHFNNPP FLDNTSFNNN SLKKEHRQLQ NNNDDNNNNI  300
PPWLTFPINN NSTSNDHNHH QIINPNHNNR INLGPTSLHL IQSASPSSPH MSATALLQKA  360
AQMGSTMSSN SNNNNNNNNN NNNAEPPHTI IPHTNCNFGL NLSSTTTTTT TSSSSRDIHQ  420
NHILEEAAAG LSHALPFYRN KIANFEGAGD SFELDQFGGV FKKNNDHHHH QAAAAGLSTR  480
DFLGLRAISH TEFLSNIAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34157232372Zinc finger protein JACKDAW
5b3h_F2e-34157232372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110123KLKQRANKEVIRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6826790.0LN682679.1 Cucumis melo genomic scaffold, unanchored_scaffold00852.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465570.10.0PREDICTED: protein indeterminate-domain 7-like, partial
TrEMBLA0A1S3CQM60.0A0A1S3CQM6_CUCME; protein indeterminate-domain 7-like
STRINGXP_008465570.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-119indeterminate(ID)-domain 7