PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_10064.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 373aa MW: 39947.6 Da PI: 10.1581

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_10064.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	104	157	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ MLOC_10064.1 104 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 157 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	101	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-28	101	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-24	104	157	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	105	156	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MATAADAPDL SLHISPPSPT GKAGSGRGDE MAISAESTEL CLGLDMAAGR QRGEVSNGHS 60 DPEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGSVGKKS SRAPRMRWTT ALHAHFVQAV 120 QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKG TTSDRSCAAG HGQIRDMGFM 180 RRGGEVDGFD MFSNIISNTR RQPWASSPAE QLRPPFAQDQ GGGGPPLPSA YLMSIHQYLM 240 KQNQGWRGAQ QQDASLNCPG QDRGQRLHVG AHHDETPRIG SSTAGFARGW SSSSSLSLSP 300 SPSTPLQMNG RNAGSAAEQA CMKQQQQQAP SRVPSLEMSL GRQGWQNAIE QQQRQGQPNV 360 ESSASKELTL LKC

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MATAADAPDL SLHISPPSPT GKAGSGRGDE MAISAESTEL CLGLDMAAGR QRGEVSNGHS  60
DPEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGSVGKKS SRAPRMRWTT ALHAHFVQAV  120
QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKG TTSDRSCAAG HGQIRDMGFM  180
RRGGEVDGFD MFSNIISNTR RQPWASSPAE QLRPPFAQDQ GGGGPPLPSA YLMSIHQYLM  240
KQNQGWRGAQ QQDASLNCPG QDRGQRLHVG AHHDETPRIG SSTAGFARGW SSSSSLSLSP  300
SPSTPLQMNG RNAGSAAEQA CMKQQQQQAP SRVPSLEMSL GRQGWQNAIE QQQRQGQPNV  360
ESSASKELTL LKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	105	159	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	105	159	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	105	159	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	105	159	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_10064.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189915.1	0.0	probable transcription factor RL9
TrEMBL	M0UDT6	0.0	M0UDT6_HORVV; Uncharacterized protein
STRING	MLOC_10064.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	3e-32	G2-like family protein