PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10064.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 156aa    MW: 16324.3 Da    PI: 10.3143
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10064.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57e-29104153251
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  MLOC_10064.2 104 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 153
                   9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25100153IPR009057Homeodomain-like
SuperFamilySSF466895.55E-14101153IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-21104153IPR006447Myb domain, plants
PfamPF002499.8E-7105153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MATAADAPDL SLHISPPSPT GKAGSGRGDE MAISAESTEL CLGLDMAAGR QRGEVSNGHS  60
DPEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGSVGKKS SRAPRMRWTT ALHAHFVQAV  120
QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16105153452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10064.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189915.15e-96probable transcription factor RL9
SwissprotQ9FJV52e-29KAN4_ARATH; Probable transcription factor KAN4
TrEMBLM0UDT71e-108M0UDT7_HORVV; Uncharacterized protein
STRINGMLOC_10064.11e-104(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.27e-29G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]