PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10064.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 224aa    MW: 23863.8 Da    PI: 9.3648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10064.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.7e-32104157255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_10064.4 104 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 157
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-16101157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29101157IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24104157IPR006447Myb domain, plants
PfamPF002496.4E-8105156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MATAADAPDL SLHISPPSPT GKAGSGRGDE MAISAESTEL CLGLDMAAGR QRGEVSNGHS  60
DPEQRLHQPS QIPRFKKSSA DSQAGSSGGA ARSGSVGKKS SRAPRMRWTT ALHAHFVQAV  120
QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKG TTSDRSCAAG HGQIRDMGFM  180
RRGGEVDGFD MFSNIISNTR DGEVHSSKML HSIAQGRTED NACM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-17105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17105159357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17105159357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10064.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189915.11e-131probable transcription factor RL9
TrEMBLA0A3B6JEG71e-151A0A3B6JEG7_WHEAT; Uncharacterized protein
STRINGMLOC_10064.11e-143(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-33G2-like family protein