PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10221.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 270aa    MW: 29091.6 Da    PI: 7.9242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10221.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-152576155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s y+GV+++++ g+W A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MLOC_10221.4 25 SIYRGVTRHHQHGKWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 76
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-102576IPR001471AP2/ERF domain
CDDcd000181.21E-242586No hitNo description
SuperFamilySSF541712.03E-182585IPR016177DNA-binding domain
SMARTSM003802.6E-332690IPR001471AP2/ERF domain
PROSITE profilePS5103219.0192684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-192684IPR001471AP2/ERF domain
PRINTSPR003679.2E-52738IPR001471AP2/ERF domain
PRINTSPR003679.2E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKSMTRQEFI AHLRRRSSGF SRGASIYRGV TRHHQHGKWQ ARIGRVAGNK DLYLGTFTTQ  60
EEAAEAYDVA AIKFRGLNAV TNFDITRYDV DKIMESSSLL PGEEARKVKP IEAANHVPAN  120
AMHNGGAELS HAEEGSSGVW KMVLHGTPQQ AAPCTTEVAD IQKGFMDGDS RSSLHGVAGL  180
DAESAAHEID ASGKINYSNS SSLVTSLSNS REGSPERFSL PSLYAKHPNA VSLATMSPWM  240
AMPAPTATHA LRGPNSSIPT MPVFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10221.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4585180.0AB458518.1 Triticum aestivum WANT1 mRNA for AP2 transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159292.11e-179AP2-like ethylene-responsive transcription factor ANT isoform X1
RefseqXP_020159300.11e-179AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z022e-74CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A287PEI10.0A0A287PEI1_HORVV; Uncharacterized protein
TrEMBLM0UEK60.0M0UEK6_HORVV; Uncharacterized protein
STRINGTraes_4DL_63ACC4A09.11e-179(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.15e-53AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]