PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10264.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 216aa    MW: 22931.3 Da    PI: 6.6716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10264.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30128186159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+++dp +v++tYeg+H h 
  MLOC_10264.2 128 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCDVKKRVERDRDDPAYVVTTYEGTHSHA 186
                   59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-33114188IPR003657WRKY domain
SuperFamilySSF1182905.89E-28120188IPR003657WRKY domain
PROSITE profilePS5081131.376123188IPR003657WRKY domain
SMARTSM007741.0E-34128187IPR003657WRKY domain
PfamPF031062.0E-24129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAIVGAAPVL YQQQAQAVGD GCYFSFMSSY FSHGGASSNA SSTASSFSAT LGATPSAAPA  60
IAADPAMQFD ISEFLLDESG FAAPLPDGGA AGATAAMSAT AHTRSAAEVE RPRTERIAFR  120
TRSEIEILDD GYKWRKYGKK SVKNSPNPRN YYRCSTEGCD VKKRVERDRD DPAYVVTTYE  180
GTHSHASPST IYYASQDAAS GRFFVAGTHP PPGSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26118189778Probable WRKY transcription factor 4
2lex_A8e-26118189778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10264.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3543860.0AK354386.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006P14.
GenBankAK3634510.0AK363451.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015J14.
GenBankKC7762710.0KC776271.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 19 (WRKY19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192531.11e-122probable WRKY transcription factor 51
TrEMBLA0A287GFN91e-156A0A287GFN9_HORVV; Uncharacterized protein
TrEMBLF2CRY41e-157F2CRY4_HORVV; Predicted protein
STRINGMLOC_10264.21e-158(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-32WRKY DNA-binding protein 51