PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_10280.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

MYB_related

Protein Properties

Length: 194aa MW: 21864.6 Da PI: 10.1383

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_10280.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.1e-16	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++++ kqlG+g+W+ I++ + ++Rt+ q+ s+ qky MLOC_10280.3 93 PWTEEEHRKFLEGLKQLGKGDWRGISKNFVTTRTATQVASHAQKY 137 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.744	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-18	87	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-19	89	141	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-11	90	140	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-12	91	136	IPR009057	Homeodomain-like
CDD	cd00167	6.97E-11	93	138	No hit	No description
Pfam	PF00249	4.6E-13	93	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEEEGGARKA VLFRLFGVEV RGAEEEEEDD AEPMELKKST SMPNLASIGP ILPRGEASAS 60 HDKGYASDDG ELASTPQLKR RRRKAQERKK GIPWTEEEHR KFLEGLKQLG KGDWRGISKN 120 FVTTRTATQV ASHAQKYFLR QTNPGKKKRR ASLFDVGIPA GHGYDDQVLD PVQSSSRQVN 180 QNIHRIQHLT YALR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	KRRRRK
2	78	89	KRRRRKAQERKK
3	79	89	RRRRKAQERKK
4	145	149	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_10280.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251610	0.0	AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181078.1	1e-103	transcription factor DIVARICATA-like
Swissprot	B8BI93	4e-60	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	4e-60	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	M0UES9	1e-141	M0UES9_HORVV; Uncharacterized protein
STRING	MLOC_10280.2	1e-120	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	9e-33	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]