PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10322.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 242aa    MW: 26446.8 Da    PI: 8.3833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10322.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-122351247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
     MLOC_10322.2  2 IISAHAIHGNK-WASIAKLLV-GRTDNAIKNHWNST 35
                     689********.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0029138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-14137IPR009057Homeodomain-like
PROSITE profilePS5129420.976140IPR017930Myb domain
CDDcd001676.31E-8136No hitNo description
SuperFamilySSF466892.73E-9242IPR009057Homeodomain-like
PfamPF002495.5E-10235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIISAHAIHG NKWASIAKLL VGRTDNAIKN HWNSTLRRRY CTGTRCTRSA SAEQPIREMS  60
RAASEERWPL SGPSSFSVME VKEAPVQTVS ESSARALQIR DINNFSSEAV ERSYPVRPVA  120
TVGAFRPYSL GSAQPMQMEM SSSTKFPTLQ PFTPEIAVSK FADTTCFATD VPNKCGHGCC  180
STEERPRNNS LLGPEFKEFI DHPPILSSSF ASLVSEISSI AWMNSGMQSS NSGNLVQSNP  240
PA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10322.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644270.0FN564427.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165805.11e-163transcription factor MYB25-like
TrEMBLA0A287M1S41e-177A0A287M1S4_HORVV; Uncharacterized protein
TrEMBLA0A287M1T81e-177A0A287M1T8_HORVV; Uncharacterized protein
STRINGMLOC_10322.31e-177(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-29myb domain protein 109