PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10629.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 86aa    MW: 9732.13 Da    PI: 8.1277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10629.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.9e-073151426
                  ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                  e Cr++++   C++ ++C+FaH+
  MLOC_10629.6 31 EVCRDYLK-NMCNR-ESCRFAHP 51
                  89******.*****.*******9 PP
2zf-CCCH23.11.3e-076183226
                  -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                  k e Cr+f r G+C + ++C+F H+
  MLOC_10629.6 61 KVEVCRDFKR-GECTR-PTCRFYHP 83
                  89********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0562753IPR000571Zinc finger, CCCH-type
SMARTSM003560.0282852IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-43152IPR000571Zinc finger, CCCH-type
PfamPF146080.00173351No hitNo description
SMARTSM003560.0115984IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9296085IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-56183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-46182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046836Biological Processglycolipid transport
GO:0005737Cellular Componentcytoplasm
GO:0017089Molecular Functionglycolipid transporter activity
GO:0046872Molecular Functionmetal ion binding
GO:0051861Molecular Functionglycolipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MPPPPPPLGI PMMAPPLSPP RGFADNKNTV EVCRDYLKNM CNRESCRFAH PDSQSEVAHD  60
KVEVCRDFKR GECTRPTCRF YHPSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10629.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691861e-144AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165259.13e-44zinc finger CCCH domain-containing protein 28-like
SwissprotQ0JD072e-30C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A287II815e-54A0A287II81_HORVV; Uncharacterized protein
TrEMBLF2DZ666e-54F2DZ66_HORVV; Predicted protein (Fragment)
STRINGTraes_2AL_7181302A3.32e-43(Triticum aestivum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]