PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_10687.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 248aa MW: 27027.4 Da PI: 8.067

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_10687.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.5e-32	117	172	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+ MLOC_10687.1 117 DGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVETTV-DGQIAEIVYNGEHNHP 172 9*************************************.*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	22.756	110	174	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.5E-28	110	174	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-25	111	174	IPR003657	WRKY domain
SMART	SM00774	1.2E-34	115	173	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	117	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MQSQEKITPV KPVASRPFSS FTSFSKLLED FTGTGSAQIT SLGETVIVRR PKVTRFAPPP 60 SDLSAGIAAT MFQDAGLDTT REQMVIDPEQ VVSCDQMTAF HNINKPIHSM KNRLSYDGYN 120 WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR KVETTVDGQI AEIVYNGEHN HPQPHPPKKP 180 TSSASTEVLV PGAHGSNDAG AESQVGGCNL VLGSAPVATA FRSSCDCVDE FGNTSPVYHC 240 NTRYANVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-17	117	174	16	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269\|PubMed:12084832}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_10687.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269\|PubMed:12084832}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ863123	0.0	DQ863123.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 40 (WRKY40) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177870.1	1e-149	WRKY transcription factor 44-like
Swissprot	Q9ZUU0	3e-34	WRK44_ARATH; WRKY transcription factor 44
TrEMBL	A0A287R4V0	0.0	A0A287R4V0_HORVV; Uncharacterized protein
TrEMBL	M0UGA7	0.0	M0UGA7_HORVV; Uncharacterized protein
STRING	MLOC_10687.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	4e-34	WRKY family protein

Publications ? help Back to Top
Kim K,Jiang K,Teng SL,Feldman LJ,Huang H Using biologically interrelated experiments to identify pathway genes in Arabidopsis. Bioinformatics, 2012. 28(6): p. 815-22 [PMID:22271267] Simon M, et al. Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes. Plant Cell, 2013. 25(9): p. 3175-85 [PMID:24014549] Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128] Verweij W, et al. Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis. Plant Cell, 2016. 28(3): p. 786-803 [PMID:26977085] Gonzalez A, et al. TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway. Dev. Biol., 2016. 419(1): p. 54-63 [PMID:27046632] Hassani-Pak K, et al. Developing integrated crop knowledge networks to advance candidate gene discovery. Appl Transl Genom, 2016. 11: p. 18-26 [PMID:28018846]