PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10687.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 213aa    MW: 23343.9 Da    PI: 8.3929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10687.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-323489359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+
  MLOC_10687.6 34 DGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVETTV-DGQIAEIVYNGEHNHP 89
                  9***************************************.***************8 PP
2WRKY26.61.2e-08195213422
                   SS-EEEEEEE--TT-SS-E CS
          WRKY   4 gynWrKYGqKevkgsefpr 22 
                    ++WrKYGqK v+g+ fpr
  MLOC_10687.6 195 AFRWRKYGQKAVNGNSFPR 213
                   69****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-282791IPR003657WRKY domain
PROSITE profilePS5081122.7562791IPR003657WRKY domain
SuperFamilySSF1182903.4E-252891IPR003657WRKY domain
SMARTSM007741.2E-343290IPR003657WRKY domain
PfamPF031067.9E-253489IPR003657WRKY domain
PROSITE profilePS5081110.028187213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-6190213IPR003657WRKY domain
SuperFamilySSF1182905.36E-5193213IPR003657WRKY domain
PfamPF031061.1E-4195213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVIDPEQVVS CDQMTAFHNI NKPIHSMKNR LSYDGYNWRK YGQKQVKGSE FPRSYYKCTH  60
PTCPVKRKVE TTVDGQIAEI VYNGEHNHPQ PHPPKKPTSS ASTEVLVPGA HGSNDAGAES  120
QVGGCNLVLG SAPVATAFRS SCDCVDEFGN TSPVYHCNTS RKEKQSSITN GLTSSSEAAP  180
AFQSPTECES SRDAAFRWRK YGQKAVNGNS FPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-1734911674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10687.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8631230.0DQ863123.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 40 (WRKY40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177870.11e-127WRKY transcription factor 44-like
TrEMBLM0UGA71e-159M0UGA7_HORVV; Uncharacterized protein
STRINGMLOC_10687.21e-160(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.22e-35WRKY DNA-binding protein 4