PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10704.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 194aa    MW: 20616 Da    PI: 7.8935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10704.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00054769123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C++C++ F ++  L  H++ H
  MLOC_10704.1 47 FGCQYCSREFANSQALGGHQNAH 69
                  56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-64474No hitNo description
Gene3DG3DSA:3.30.160.606.0E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4894774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0022626Cellular Componentcytosolic ribosome
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MADIRCDQPK MTPSPSSLRI FGYDVPGGAT DAVLTPPPTP RADARRFGCQ YCSREFANSQ  60
ALGGHQNAHK KERQQHKRAR LHVDARMSYF APPPGHLIAV GHAGSAAYTR ERDAFHRWVY  120
LAHQSTAGLP FHALPAGGGC HAEPRLLQDP RDCGSAAVST GSGARACSPA DDSTEEASAM  180
GLDLDLSLAP ATSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183213.11e-119zinc finger protein 6-like
TrEMBLA0A3B6H2551e-117A0A3B6H255_WHEAT; Uncharacterized protein
TrEMBLA0A453FZ791e-117A0A453FZ79_AEGTS; Uncharacterized protein
TrEMBLA0A453FZC31e-117A0A453FZC3_AEGTS; Uncharacterized protein
STRINGMLOC_10704.11e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1235656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-15C2H2 family protein