PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_10725.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 221aa MW: 23776.8 Da PI: 6.2869

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_10725.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	104	162	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i eLe+kv+ L++e ++L+ +l+ l+ +a++ +++ MLOC_10725.1 104 KRVKRVLANRQSAARSKERKMRYIVELEQKVQILQTEATTLAAQLNLLQRDSATVATQN 162 999*********************************************99998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-17	100	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	102	165	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-9	104	159	No hit	No description
SuperFamily	SSF57959	3.59E-11	104	154	No hit	No description
Pfam	PF00170	4.3E-10	104	161	IPR004827	Basic-leucine zipper domain
CDD	cd14703	8.20E-20	105	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDVLNSSSPD SSAKADSSEN GDSEECAAWG VKRGAAAAGE PAAAGRHARS LSVDSLMGRL 60 NFASPGGAAG MFSLEFGSAE FSPAEMKKIM ADEKLAEMAL ADPKRVKRVL ANRQSAARSK 120 ERKMRYIVEL EQKVQILQTE ATTLAAQLNL LQRDSATVAT QNNELRFRLQ AMEQQAQLRD 180 ALNDALTGEV QRLKIMTAEL GVGDSCSSNG MGMAQQHNHM F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_10725.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177375.1	1e-132	transcription factor RF2b-like
Swissprot	O22873	2e-49	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A287PW51	1e-157	A0A287PW51_HORVV; Uncharacterized protein
STRING	MLOC_10725.1	1e-160	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3536	35	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	3e-52	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]