PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10878.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 218aa    MW: 22785.3 Da    PI: 10.9354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10878.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.81e-2156106155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+++++g
  MLOC_10878.1  56 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAALRFKG 106
                   68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-2056116No hitNo description
PfamPF008471.2E-1456106IPR001471AP2/ERF domain
SMARTSM003809.8E-3457120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3357114IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2357115IPR016177DNA-binding domain
PROSITE profilePS5103225.56757114IPR001471AP2/ERF domain
PRINTSPR003672.3E-125869IPR001471AP2/ERF domain
PRINTSPR003672.3E-128096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVAALTHVIS STQPAAVAGA STTASGQQVT RQHSAPLSAA ATSSSSTASE QQQQRPRYRG  60
VRQRPWGKWA AEIRDPVKAA RVWLGTFDTA EDAARAYDAA ALRFKGAKAK LNFPAAGHAI  120
GQLLAAGGGT SPSLRQQQRP VVAFRPQINA PAAVAGEEFP DLHRYAHILQ SGDVDLRTVA  180
AGGITPVQSS SSTPAHDSGS PPRPDDRRHG ERNSGPGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2458114663ATERF1
3gcc_A5e-2458114663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939961e-69FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188611.11e-114ethylene-responsive transcription factor RAP2-6-like
SwissprotQ9FH541e-30EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A287WKC71e-151A0A287WKC7_HORVV; Uncharacterized protein
STRINGMLOC_10878.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2564555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-23ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]