PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10878.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 197aa    MW: 20973.3 Da    PI: 10.5616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10878.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2698.3e-223585155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++aa+++++g
  MLOC_10878.2 35 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDAAALRFKG 85
                  68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.11E-203595No hitNo description
PfamPF008471.0E-143585IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-233694IPR016177DNA-binding domain
PROSITE profilePS5103225.5673693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-333693IPR001471AP2/ERF domain
SMARTSM003809.8E-343699IPR001471AP2/ERF domain
PRINTSPR003672.0E-123748IPR001471AP2/ERF domain
PRINTSPR003672.0E-125975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MYLMGETVTR QHSAPLSAAA TSSSSTASEQ QQQRPRYRGV RQRPWGKWAA EIRDPVKAAR  60
VWLGTFDTAE DAARAYDAAA LRFKGAKAKL NFPAAGHAIG QLLAAGGGTS PSLRQQQRPV  120
VAFRPQINAP AAVAGEEFPD LHRYAHILQS GDVDLRTVAA GGITPVQSSS STPAHDSGSP  180
PRPDDRRHGE RNSGPGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-243793663ATERF1
3gcc_A6e-243793663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10878.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939961e-69FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188611.11e-100ethylene-responsive transcription factor RAP2-6-like
TrEMBLM0UH301e-140M0UH30_HORVV; Uncharacterized protein
STRINGMLOC_10878.11e-136(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-23ERF family protein