PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11017.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 193aa    MW: 21689.8 Da    PI: 10.101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11017.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.34e-1671372128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeek...ew.yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +G+ F+Pt  elv++yL +++      +  +i+e  d++++ P++Lp + +++++    w +fF+ +  ++ t   +    + gyW + g +k+ +
  MLOC_11017.1   7 IAGCVFQPTGRELVNHYLVPRAGLGGDIVPGFIEEGvDVLSLPPRKLPFRENHKREygeVWgFFFAAQPARQ-T--CPP-PGAGGYWVQYGPEKAYY 99 
                   689*****************99888755556777645***********532222223436756665554443.2..222.3458************9 PP

           NAM  94 sk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                    + +ge+v  ++ +++    kg + + + t+W+m+eyr+
  MLOC_11017.1 100 GQtGGEAVAFRRRFAYRftwKGGEVR-SPTRWLMKEYRI 137
                   9878899*******998766666555.68********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-193166IPR003441NAC domain
PROSITE profilePS5100523.0176166IPR003441NAC domain
PfamPF023652.4E-128137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MANPNLIAGC VFQPTGRELV NHYLVPRAGL GGDIVPGFIE EGVDVLSLPP RKLPFRENHK  60
REYGEVWGFF FAAQPARQTC PPPGAGGYWV QYGPEKAYYG QTGGEAVAFR RRFAYRFTWK  120
GGEVRSPTRW LMKEYRINRG SAAFRHAHPD PVAPDVVFVV SKVYRKPVLP PPVDSSSSEE  180
EGSERSIVLK KRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3726480.0AK372648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158486.11e-104NAC transcription factor NAM-B2-like
TrEMBLF2E9231e-138F2E923_HORVV; Predicted protein
STRINGMLOC_11017.11e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231