PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11088.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 289aa    MW: 32272.8 Da    PI: 5.6696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11088.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.99.6e-19135196259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                   +D ++WrKYG K++  ++fpr YYrC ++   +Cp+kk v++++  d+ ++ +t  ++H+++
  MLOC_11088.1 135 NDRFHWRKYGEKKILHADFPRLYYRCGYSdehKCPAKKYVQQQNsGDQPMFLVTLINDHTCD 196
                   79*************************998899*******976516999**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-19126196IPR003657WRKY domain
SuperFamilySSF1182905.49E-19129196IPR003657WRKY domain
PROSITE profilePS5081114.481129198IPR003657WRKY domain
SMARTSM007741.0E-26134197IPR003657WRKY domain
PfamPF031065.4E-20135196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAMRPKTEMS PPPATPSPSD QRDAVIEELR KGSQLAEFLR QQVELIPEDR CRDAALANVS  60
NISTALASSL SVLQSEKEQY CSSSSYDPGH ASGASGGGVR NGPVARSRNR KAKHRRGTYG  120
EDLPIKEILT EAPENDRFHW RKYGEKKILH ADFPRLYYRC GYSDEHKCPA KKYVQQQNSG  180
DQPMFLVTLI NDHTCDTLFP DEDQDQPPSS PSSANNSQVL DFSKASLSSA VGVSRLKEEE  240
DADMSVTVPS YNYTYDELSS SSLPFLSPKQ WEMEMDIKSL FRRHSGDGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108115NRKAKHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177339.11e-168probable WRKY transcription factor 70
TrEMBLA0A287E8A60.0A0A287E8A6_HORVV; Uncharacterized protein
TrEMBLM0UHX50.0M0UHX5_HORVV; Uncharacterized protein
STRINGMLOC_11088.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.13e-16WRKY DNA-binding protein 54